Genetic Characteristics of Coronaviruses from Korean Bats in 2016.
Identifieur interne : 000C77 ( Main/Exploration ); précédent : 000C76; suivant : 000C78Genetic Characteristics of Coronaviruses from Korean Bats in 2016.
Auteurs : Saemi Lee [Corée du Sud] ; Seong-Deok Jo [Corée du Sud] ; Kidong Son [Corée du Sud] ; Injung An [Corée du Sud] ; Jipseol Jeong [Corée du Sud] ; Seung-Jun Wang [Corée du Sud] ; Yongkwan Kim [Corée du Sud] ; Weonhwa Jheong [Corée du Sud] ; Jae-Ku Oem [Corée du Sud]Source :
- Microbial ecology [ 1432-184X ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Coronavirus.
- isolement et purification : Coronavirus.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- Animaux, Chine, Coronavirus, Génome viral, Hong Kong, Humains, Phylogénie, République de Corée, Variation génétique.
- Wicri :
- geographic : République populaire de Chine, Hong Kong.
English descriptors
- KwdEn :
- MESH :
- geographic : China, Hong Kong, Republic of Korea.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Genetic Variation, Genome, Viral, Humans, Phylogeny.
Abstract
Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family Rhinolophidae, and four fecal samples and one carcass (intestine) from three species of the family Vespertiliodae. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1-99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1-95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.
DOI: 10.1007/s00248-017-1033-8
PubMed: 28725945
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000A96
- to stream PubMed, to step Curation: 000A96
- to stream PubMed, to step Checkpoint: 000A02
- to stream Ncbi, to step Merge: 002E32
- to stream Ncbi, to step Curation: 002E32
- to stream Ncbi, to step Checkpoint: 002E32
- to stream Main, to step Merge: 000C79
- to stream Main, to step Curation: 000C77
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic Characteristics of Coronaviruses from Korean Bats in 2016.</title><author><name sortKey="Lee, Saemi" sort="Lee, Saemi" uniqKey="Lee S" first="Saemi" last="Lee">Saemi Lee</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Jo, Seong Deok" sort="Jo, Seong Deok" uniqKey="Jo S" first="Seong-Deok" last="Jo">Seong-Deok Jo</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Son, Kidong" sort="Son, Kidong" uniqKey="Son K" first="Kidong" last="Son">Kidong Son</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="An, Injung" sort="An, Injung" uniqKey="An I" first="Injung" last="An">Injung An</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Jeong, Jipseol" sort="Jeong, Jipseol" uniqKey="Jeong J" first="Jipseol" last="Jeong">Jipseol Jeong</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Seung Jun" sort="Wang, Seung Jun" uniqKey="Wang S" first="Seung-Jun" last="Wang">Seung-Jun Wang</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Yongkwan" sort="Kim, Yongkwan" uniqKey="Kim Y" first="Yongkwan" last="Kim">Yongkwan Kim</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Jheong, Weonhwa" sort="Jheong, Weonhwa" uniqKey="Jheong W" first="Weonhwa" last="Jheong">Weonhwa Jheong</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Oem, Jae Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea. jku0623@korea.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:28725945</idno><idno type="pmid">28725945</idno><idno type="doi">10.1007/s00248-017-1033-8</idno><idno type="wicri:Area/PubMed/Corpus">000A96</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000A96</idno><idno type="wicri:Area/PubMed/Curation">000A96</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000A96</idno><idno type="wicri:Area/PubMed/Checkpoint">000A02</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000A02</idno><idno type="wicri:Area/Ncbi/Merge">002E32</idno><idno type="wicri:Area/Ncbi/Curation">002E32</idno><idno type="wicri:Area/Ncbi/Checkpoint">002E32</idno><idno type="wicri:Area/Main/Merge">000C79</idno><idno type="wicri:Area/Main/Curation">000C77</idno><idno type="wicri:Area/Main/Exploration">000C77</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic Characteristics of Coronaviruses from Korean Bats in 2016.</title><author><name sortKey="Lee, Saemi" sort="Lee, Saemi" uniqKey="Lee S" first="Saemi" last="Lee">Saemi Lee</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Jo, Seong Deok" sort="Jo, Seong Deok" uniqKey="Jo S" first="Seong-Deok" last="Jo">Seong-Deok Jo</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Son, Kidong" sort="Son, Kidong" uniqKey="Son K" first="Kidong" last="Son">Kidong Son</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="An, Injung" sort="An, Injung" uniqKey="An I" first="Injung" last="An">Injung An</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Jeong, Jipseol" sort="Jeong, Jipseol" uniqKey="Jeong J" first="Jipseol" last="Jeong">Jipseol Jeong</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Seung Jun" sort="Wang, Seung Jun" uniqKey="Wang S" first="Seung-Jun" last="Wang">Seung-Jun Wang</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Yongkwan" sort="Kim, Yongkwan" uniqKey="Kim Y" first="Yongkwan" last="Kim">Yongkwan Kim</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Jheong, Weonhwa" sort="Jheong, Weonhwa" uniqKey="Jheong W" first="Weonhwa" last="Jheong">Weonhwa Jheong</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author><author><name sortKey="Oem, Jae Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea. jku0623@korea.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689</wicri:regionArea><wicri:noRegion>22689</wicri:noRegion></affiliation></author></analytic><series><title level="j">Microbial ecology</title><idno type="eISSN">1432-184X</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>China</term><term>Chiroptera (virology)</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Hong Kong</term><term>Humans</term><term>Phylogeny</term><term>Republic of Korea</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Chine</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Génome viral</term><term>Hong Kong</term><term>Humains</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Phylogénie</term><term>République de Corée</term><term>Variation génétique</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term><term>Hong Kong</term><term>Republic of Korea</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Humans</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Chine</term><term>Coronavirus</term><term>Génome viral</term><term>Hong Kong</term><term>Humains</term><term>Phylogénie</term><term>République de Corée</term><term>Variation génétique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term><term>Hong Kong</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family Rhinolophidae, and four fecal samples and one carcass (intestine) from three species of the family Vespertiliodae. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1-99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1-95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.</div></front></TEI><affiliations><list><country><li>Corée du Sud</li></country></list><tree><country name="Corée du Sud"><noRegion><name sortKey="Lee, Saemi" sort="Lee, Saemi" uniqKey="Lee S" first="Saemi" last="Lee">Saemi Lee</name></noRegion><name sortKey="An, Injung" sort="An, Injung" uniqKey="An I" first="Injung" last="An">Injung An</name><name sortKey="Jeong, Jipseol" sort="Jeong, Jipseol" uniqKey="Jeong J" first="Jipseol" last="Jeong">Jipseol Jeong</name><name sortKey="Jheong, Weonhwa" sort="Jheong, Weonhwa" uniqKey="Jheong W" first="Weonhwa" last="Jheong">Weonhwa Jheong</name><name sortKey="Jo, Seong Deok" sort="Jo, Seong Deok" uniqKey="Jo S" first="Seong-Deok" last="Jo">Seong-Deok Jo</name><name sortKey="Kim, Yongkwan" sort="Kim, Yongkwan" uniqKey="Kim Y" first="Yongkwan" last="Kim">Yongkwan Kim</name><name sortKey="Oem, Jae Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name><name sortKey="Son, Kidong" sort="Son, Kidong" uniqKey="Son K" first="Kidong" last="Son">Kidong Son</name><name sortKey="Wang, Seung Jun" sort="Wang, Seung Jun" uniqKey="Wang S" first="Seung-Jun" last="Wang">Seung-Jun Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000C77 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000C77 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= SrasV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:28725945
|texte= Genetic Characteristics of Coronaviruses from Korean Bats in 2016.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:28725945" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a SrasV1
| This area was generated with Dilib version V0.6.33. |  |